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IGVFFI6803APEV

released
validated
File Set
IGVFDS4161OUYL(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 268
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2116_R2
bradley-bernstein:SS-LS_268_R2
buenrostro-bernstein:SS-LS_2116_R2
buenrostro-bernstein:SS-LS_268_R2
md5sum
501942b60ffa203286eb70de4be24e75
Content MD5sum
a80fbed87a90bb7e063171f0c8051b3b
File Size
1.7 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-198_L2_SS-PKR-132_SS-V1-LEFT-HALF_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
268
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
36354273

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7523TEDF, IGVFFI6803APEV
Jason Buenrostro, Broad
1.2 KB
validated