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INDEXED
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SequenceFile
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IGVFFI6786SRQC
IGVFFI6786SRQC
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9262YHXZ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X036_G2_P036_L004_I1
md5sum
39658f573c6c39bce127f0449f11c004
Content MD5sum
ffccb76209dbe109de85d1795e7a17fb
File Size
1.2 GB
Submitted File Name
Multiome_RNA_X036_G2_L002_P036_S56_L004_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H2WFTDSX7
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
10
Read Count
194420199
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2877SEAA
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples