IGVFFI6785RKLM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1686QXQO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G8_P059_L005_R2

md5sum

d45be9e287354bbb943325fadf770fab

Content MD5sum

3d12c0baffdf4f7e76fbb2c71c3998b7

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_RP012_G8_L008_P059_S88_L005_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67559030

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9167CXIN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples