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IGVFFI6779DTGR

released
validated
File Set
IGVFDS6940QNAZ(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp4_multi_10x2_NGS1_r1
md5sum
8c80e686fba9a1dbe248e0fb7f85d4b2
Content MD5sum
06fa248d796bc1cfd24c932887a28b90
File Size
1.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF4_McGinnis/MULTI/FASTQ/MULTI_2_CMAS_IGVF4_R_S16_L005_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
49371383

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
1.2 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9919EKYJ, IGVFFI6779DTGR, IGVFFI8887TAYJ, IGVFFI2329UCDW
Ansuman Satpathy, Stanford
1.3 KB
validated