IGVFFI6774LGPP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6045MTVX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G3_P075_L005_R3

md5sum

685657dcf698ec114035f98eae3a401a

Content MD5sum

b30b7d165f8be95eabc12677328deb76

File Size

9.7 GB

Submitted File Name

Multiome_ATAC_RP028_G3_L003_P075_S35_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

140683519

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9948JMCE

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples