IGVFFI6742TCRI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2046NYYD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G5_P007_L003_R3

md5sum

d34fee13f34d19e871a7f38696b36f6b

Content MD5sum

0f0283a99ca963b8cf8fe274625c56c5

File Size

11 GB

Submitted File Name

Multiome_ATAC_X010_G5_L005_P007_S33_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

208826813

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9348OQXF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples