IGVFFI6740OBHM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5006HOVG(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G6_P042_L004_I1

md5sum

74982c987cb54099f75f7a73f1329911

Content MD5sum

2fc7061c4af801a1d0f5e5c007156d18

File Size

384 MB

Submitted File Name

Multiome_RNA_X041_G6_L006_P042_S16_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57452114

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0027DAWZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples