IGVFFI6733QFQU

released

validated

File Set

IGVFDS6346MBBC(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep1_S136

md5sum

5a612f89797f59bbb2e3898a151b5218

Content MD5sum

aa02f3fef539dd2c5d935c25d90401a2

File Size

30 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF2-BinB-PCR1-Rep1_S136_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

AGGATCTA:TTGA

Average Read Length

Read Count

1522504

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM9179ZLWQ

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library