IGVFFI6721OZQR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1728ZLAX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G5_P051_L006_R3

md5sum

1c0e963157c89097125bfa3abe3a96e0

Content MD5sum

e79ee6f84f7685559078db567645ad77

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_RP001_G5_L005_P051_S25_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

85972968

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7076WLCU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples