IGVFFI6712IVBR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0394LTRL(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X046_G8_P048_L004_R2

md5sum

91786cc151d5e421b508b1e3b517ca57

Content MD5sum

799788b49048ebe5a3bf2b8b2a05aeb6

File Size

11 GB

Submitted File Name

Multiome_RNA_X046_G8_L008_P048_S20_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

225586509

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3471DKMI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples