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INDEXED
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SequenceFile
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IGVFFI6712IVBR
IGVFFI6712IVBR
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0394LTRL
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X046_G8_P048_L004_R2
md5sum
91786cc151d5e421b508b1e3b517ca57
Content MD5sum
799788b49048ebe5a3bf2b8b2a05aeb6
File Size
11 GB
Submitted File Name
Multiome_RNA_X046_G8_L008_P048_S20_L004_R2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5VKTDSX7
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
90
Read Count
225586509
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3471DKMI
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF