IGVFFI6708LGQK

released

validated

File Set

IGVFDS6224TNVO(mixed CRISPR FlowFISH screen sorted on the expression of MYC integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR1_Rep1_S30

md5sum

1d08e13a5943e763688e4eef16c78d08

Content MD5sum

4b1132dfefc31abb1d902c2092e02a0b

File Size

47 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinF-PCR1-Rep1_S30_R1_001.fastq.gz

Checkfiles Version

Legacy version of checkfiles

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

ATAGCGTC:TGCG

Average Read Length

Read Count

2428901

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM9724UBWS

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library