IGVFFI6683WGVH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6570CCTQ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP026_G4_P076_L005_R1

md5sum

32869cc2d07fbec4f8c5d9af54ed397d

Content MD5sum

665ca99c05f51e16bff67af41c2c4ead

File Size

19 GB

Submitted File Name

Multiome_RNA_RP026_G4_L004_P076_S44_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19UBCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

207659027

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1367EGUO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples