IGVFFI6659RQRP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7449XPIG(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G4_P059_L005_I1

md5sum

eebfc3ddbbdd7fb102fb7f125911f5d3

Content MD5sum

cf96979d5621f822019a677f8a2d4b50

File Size

486 MB

Submitted File Name

Multiome_ATAC_RP012_G4_L004_P059_S84_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70218570

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1205XBBX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples