{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI6648RLKN/",
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],
"accession": "IGVFFI6648RLKN",
"aliases": [
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],
"assay_titles": [
"10x multiome"
],
"audit": {},
"award": {
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"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "c0cdbbd6433fc7ab13f8e09b9945df7d",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T01:39:53.218616+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS1967EATG/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1967EATG",
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"term_name": "single-nucleus RNA sequencing assay"
},
"file_set_type": "experimental data",
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{
"@id": "/multiplexed-samples/IGVFSM9860TATP/",
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"Item"
],
"accession": "IGVFSM9860TATP",
"classifications": [
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],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "mild cognitive impairment",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
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],
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"summary": "Parkinson's disease",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"@type": [
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],
"status": "in progress",
"summary": "cerebral amyloid angiopathy",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"@type": [
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"Item"
],
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"summary": "Alzheimer disease",
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}
],
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"sample_terms": [
{
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"term_name": "putamen"
},
{
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"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
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"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
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"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
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}
],
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"treatments": []
}
],
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},
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"href": "/sequence-files/IGVFFI6648RLKN/@@download/IGVFFI6648RLKN.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"md5sum": "24745d46b7d472535b4b170c4ded9112",
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"s3_uri": "s3://igvf-files/2025/03/20/e19ecad9-9583-4462-8a0d-22ac3916c42a/IGVFFI6648RLKN.fastq.gz",
"schema_version": "15",
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"sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
"sequencing_platform": {
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"status": "released",
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"submitted_by": {
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"title": "Ryan Corces"
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"submitted_file_name": "Multiome_RNA_X023_G1_L001_P022_S17_L002_R1_001.fastq.gz",
"summary": "R1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "e19ecad9-9583-4462-8a0d-22ac3916c42a"
}