IGVFFI6628DNUA

released
validated
File Set
IGVFDS9816UKEE(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_CCND1_Auxin0hrs-FF1-BinC-PCR3-Rep1_S261
md5sum
5d1f511721054dbaaaea7796f44f0751
Content MD5sum
d25a97862012ef67b6493a2b757494a8
File Size
24 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/CCND1-Auxin0hrs-FF1-BinC-PCR3-Rep1_S261_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
CTGTAATC:GCCA
Average Read Length
21
Read Count
1084211

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6628DNUA
Jesse Engreitz, Stanford
913 B
validated

Attribution