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IGVFFI6627SHNX

released
validated
File Set
IGVFDS6911ZLIV(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 176
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_176_R2
buenrostro-bernstein:SS-LS_176_R2
md5sum
c984068e9b89241d0c155c14f355ab90
Content MD5sum
fd1fb6f6f3556fa961abc22c48c44a38
File Size
18 GB
Submitted File Name
gs://fc-7b87fd5f-6af3-4823-befa-ac5875469fa1/BMMC_single_donor_RNA_L001_R2.fastq.gz
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
176
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
511250744

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 212), Homo sapiens

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
639 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1677MAQO, IGVFFI6627SHNX
Jason Buenrostro, Broad
1.2 KB
validated

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad