IGVFFI6594ZCUR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6314VXYS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X030_G2_P029_L003_R1

md5sum

763ae182ce38f5976ed87ce90fa2753e

Content MD5sum

b801203f54148be646e1071ce829d518

File Size

13 GB

Submitted File Name

Multiome_ATAC_X030_G2_L002_P029_S30_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

240025899

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9502SLKA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples