IGVFFI6588RZPT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0082OURJ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G3_P023_L003_R2

md5sum

a179508ccc8e7f4e7772f73722d79320

Content MD5sum

2d548e0e81625aaa43b93cbc7ef32e2e

File Size

3.9 GB

Submitted File Name

Multiome_ATAC_X024_G3_L003_P023_S27_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

215908974

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7556QXIA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples