IGVFFI6560UIQC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4334WKOE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP011_G4_P060_L005_R1

md5sum

87bea241053444835628e115bb7ba3d7

Content MD5sum

bebd1d83c3002628c95711545367e701

File Size

1.7 GB

Submitted File Name

Multiome_RNA_RP011_G4_L005_P060_S29_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

88387138

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9332LJBD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples