IGVFFI6560FPLV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3937RPYF(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G6_P023_L003_I1

md5sum

c31ac1acf614643d45990143ae3752e7

Content MD5sum

decd02eb96f49bbd50eb223a9cec6d37

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X024_G6_L006_P023_S30_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

199587995

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0702KZGF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples