IGVFFI6547OTNE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3068NKFQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X039_G6_P039_L003_R1

md5sum

0ebff98434af18a35fde667df2f7e261

Content MD5sum

e16b0c70341423f833de0540b8768a34

File Size

7.5 GB

Submitted File Name

Multiome_ATAC_X039_G6_L006_P039_S28_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

235930041

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4211DBUX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples