IGVFFI6539KJTO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5286VZSS(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G2_P037_L001_R2

md5sum

4e5469c058ecdaa2f369c0fdfa796005

Content MD5sum

cd07b689b56e644d3b3ee0f2b92ff4c5

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X037_G2_L002_P037_S8_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

178786312

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0875AMYG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples