IGVFFI6534RFUE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1818PYSX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G4_P037_L001_R3

md5sum

b3f3bd332d0e623c48f72e6279eb3f01

Content MD5sum

60f824f7c695e0f3de160c3941df2a6a

File Size

8.2 GB

Submitted File Name

Multiome_ATAC_X036_G4_L004_P037_S2_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

256049216

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8249LKNM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples