IGVFFI6531WVNH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7041PKNF(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G8_P021_L001_R2

md5sum

83dc105a81a76387f29db6311e4c6824

Content MD5sum

0c39f1059d6b4896fa85080c4b5c8c20

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X021_G8_L008_P021_S6_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

270432358

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7306JQRY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples