IGVFFI6526PWHJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3710XUSS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G3_P053_L002_R1

md5sum

fad453a0272c5c2f51388a272d91947c

Content MD5sum

2f6e8b0521f882779d5707b05c90c24c

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP004_G3_L003_P053_S11_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70596485

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5358MDTC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples