IGVFFI6519GSCH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4012MFKW(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X048_G7_P049_L001_R3

md5sum

2d32ae137872a26c71eeb03b1b5a9a78

Content MD5sum

cd6a1012623697432c9e2c5e39067837

File Size

6.4 GB

Submitted File Name

Multiome_ATAC_X048_G7_L007_P049_S11_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

192473576

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2062JXFD

MultiplexedSample

posterior cingulate gyrus, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 93 years) substantia nigra tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples