Home

IGVFFI6518VSJY

released
validated
File Set
IGVFDS9581AWPV(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp4_rna_10x1_NGS3_i2
md5sum
8eed6259908e3a22aabe4f2928701a2d
Content MD5sum
99bbb8c636444b97e841be80c5876607
File Size
2.7 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF4_McGinnis/GEX/FASTQ/GEX_1_S40_L007_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
2
Flowcell ID
225LGWLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
600269796

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
225 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2925TWYD, IGVFFI6518VSJY, IGVFFI3820QBBR, IGVFFI8222YBZL
Ansuman Satpathy, Stanford
1.4 KB
validated