IGVFFI6514GXEM

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI6514GXEM/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6514GXEM",
    "aliases": [
        "jay-shendure:bulkMPRA_devCRE_mEBs_rep2B_1_day0_DNA_R3"
    ],
    "assay_titles": [
        "MPRA"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "a1347c6576786313a0a58d2e350f13ae",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-09T00:52:12.619263+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS6028VFBK/",
        "accession": "IGVFDS6028VFBK",
        "file_set_type": "quantification DNA barcode sequencing",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM1671CSBE/",
                "accession": "IGVFSM1671CSBE",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0004038/",
                        "status": "released",
                        "term_name": "mouse embryonic stem cell"
                    }
                ],
                "status": "released",
                "summary": "mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library",
                "targeted_sample_term": {
                    "@id": "/sample-terms/UBERON_0014374/",
                    "status": "released",
                    "term_name": "embryoid body"
                },
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci"
    },
    "file_size": 372421025,
    "flowcell_id": "H5VLMBGXM",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI6514GXEM/@@download/IGVFFI6514GXEM.fastq.gz",
    "illumina_read_type": "R3",
    "input_file_for": [
        "/tabular-files/IGVFFI0292XWJM/",
        "/tabular-files/IGVFFI4223UWJR/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 20,
    "md5sum": "a3d960547199dd237d46475dc5ed08b2",
    "mean_read_length": 20,
    "minimum_read_length": 20,
    "read_count": 19780330,
    "release_timestamp": "2024-06-27T00:41:13.550506+00:00",
    "s3_uri": "s3://igvf-files/2023/12/09/6c4e9b5f-e89d-4bf7-8cad-28324dd2bc0c/IGVFFI6514GXEM.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0009173/",
        "status": "released",
        "term_name": "Illumina NextSeq 500"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/bulkMPRA_devCRE_mEBs/bulk_MPRA_mEB_series_mBC_rep2B1_d00_DNA_R3_001.fastq.gz",
    "summary": "R3 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "6c4e9b5f-e89d-4bf7-8cad-28324dd2bc0c"
}