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INDEXED
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SequenceFile
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IGVFFI6493AYQR
IGVFFI6493AYQR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1577AGYT
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X011_G3_P010_L002_I1
md5sum
128eba9539d4f5cccaf3293306adc3a7
Content MD5sum
57a1f82e6ca76fbfb6579e908175daa6
File Size
1.6 GB
Submitted File Name
Multiome_RNA_X011_G3_L003_P010_S5_L002_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HJ7TNDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
10
Read Count
220309825
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4167YYTO
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples