IGVFFI6489IHVT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9259SQOO(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G2_P057_L001_R3

md5sum

8f974fbe34519b2ca6b9bd44f71285c7

Content MD5sum

1e11ae6b14662fbdb4832e6c2a3584ff

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP008_G2_L002_P057_S2_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

36156041

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5834KBZJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples