IGVFFI6476TDEO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9357CKRJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X033_G2_P033_L001_R1

md5sum

2901c830e0bd65a18d12631f7bd1c5b2

Content MD5sum

b89797f78feb4daba5aa9f6721472131

File Size

11 GB

Submitted File Name

Multiome_ATAC_X033_G2_L002_P033_S4_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

198467793

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4629RUUR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples