IGVFFI6463TPMG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0554XCBM(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G5_P065_L008_I1

md5sum

3a344af7176efc533df0e17b8a4aaa0a

Content MD5sum

9b78202cd6cc6da4da9f241827b52b82

File Size

608 MB

Submitted File Name

Multiome_ATAC_X050_G5_L005_P065_S35_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

85996338

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9388AJKM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples