IGVFFI6456XYXW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6181AGCI(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X045_G3_P045_L001_I1

md5sum

944608572cad9f6346195c5a7f20a393

Content MD5sum

3c6f56cf2faa38aa991a886f877064f6

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_X045_G3_L003_P045_S7_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

340028278

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7137FCCD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples