IGVFFI6427OERM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5146PTIC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G7_P059_L007_I1

md5sum

e96f18a536cfe6cc7f95df6375f8ac1a

Content MD5sum

78f4dcbf0a59618a9ba8b9266d207860

File Size

484 MB

Submitted File Name

Multiome_ATAC_RP011_G7_L007_P059_S79_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65151748

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5471WRIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples