IGVFFI6414KOGD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3913YYZG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G7_P073_L003_R1

md5sum

63e3e7032d8abe5679578f2f83c534e6

Content MD5sum

67eaf528f8a8250198993e22b4560ba6

File Size

9.6 GB

Submitted File Name

Multiome_ATAC_X056_G7_L007_P073_S15_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

133901529

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9530VDLK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples