IGVFFI6414FENS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5323SYBV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X033_G8_P033_L001_R3

md5sum

86917d9ab566f2736b64456d5a6bb6ee

Content MD5sum

dfe7b26afb97568da488e42f1ca59f70

File Size

11 GB

Submitted File Name

Multiome_ATAC_X033_G8_L008_P033_S10_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

198040959

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0100GAWN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples