IGVFFI6404NQKM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3530SKJW(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G5_P016_L004_I1

md5sum

319c0722214be503c6a51db8524a5c2d

Content MD5sum

5e24889e95c03cd503fc738efa8ed8a6

File Size

1.2 GB

Submitted File Name

Multiome_RNA_X017_G5_L005_P016_S13_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

209513676

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4314JKFX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples