IGVFFI6399OFTK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2419ECQE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G2_P051_L006_R1

md5sum

fd641db9165d07f8405b49108a2576fe

Content MD5sum

cf083b88c0aae35993917e8093d8695f

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_RP001_G2_L002_P051_S22_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

73367437

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7915KUKE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples