Home

IGVFFI6393JXIX

released
validated
File Set
IGVFDS4911ZDCJ(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 42
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2002_R1
bradley-bernstein:SS-LS_42_R1
buenrostro-bernstein:SS-LS_2002_R1
buenrostro-bernstein:SS-LS_42_R1
md5sum
e052ceb456c77b65d6c8057d284f6e1d
Content MD5sum
69497416a296331cd506f208553cd0da
File Size
119 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-155_L1_SS-PKR-129_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
42
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
4287839

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6393JXIX, IGVFFI9528JABE
Jason Buenrostro, Broad
1.2 KB
validated