IGVFFI6393FCOX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9563SEEB(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G5_P058_L003_I1

md5sum

59387a5e66ed916b38787d9c5ae37486

Content MD5sum

417628133d9d40b9cf22637cac4eaa4d

File Size

561 MB

Submitted File Name

Multiome_RNA_RP010_G5_L005_P058_S19_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

109556358

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8749HWYK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples