Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI6375VQAK
IGVFFI6375VQAK
released
validated
Json view
File Set
IGVFDS3345HOBS
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp15_rna_10x2_NGS2_i1
md5sum
8725a5b7063a7ca1741c4294f6483000
Content MD5sum
f5830fa4ccc4d59a093d35ebd68f2f5e
File Size
2.0 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/GEX/CMAS17_GEX2_S2_L002_I1_001.fastq.gz
Checkfiles Version
v14
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCFCLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
444850357
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0825LHRL
MultiplexedSample
GM25256 (WTC-11)
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9930KPDX
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
179 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8916OGJX
yaml
seqspec
seqspec of IGVFFI9895KCQB, IGVFFI8506NTJE, IGVFFI6375VQAK, IGVFFI5236CHYD
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford