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INDEXED
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SequenceFile
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IGVFFI6372JVRY
IGVFFI6372JVRY
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6851DOUV
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X014_G3_P014_L002_R1
md5sum
e2d6c294a18d8eac3123932516d65c48
Content MD5sum
9e75f2b6fb4d5f892a2b569e8fc14ab4
File Size
5.6 GB
Submitted File Name
Multiome_RNA_X014_G3_L003_P014_S15_L002_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HTHCCDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
28
Read Count
263484724
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4095XUWZ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples