IGVFFI6345MWPL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9145ELFW(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G2_P069_L002_R2

md5sum

af9ae5f62c2c34c11f9714e6b9499342

Content MD5sum

2ced8af4e07bd5543c6c5310899547d9

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_X051_G2_L002_P069_S10_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

138266582

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7066LYTG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples