IGVFFI6345HQKI

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI6345HQKI/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6345HQKI",
    "aliases": [
        "ansuman-satpathy:igvf_exp11_atac_10x4_NGS1_i1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "content_md5sum": "77699cb673748e6b2be8515ea3e48ada",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-07-23T00:56:47.988586+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1824DNGD/",
        "accession": "IGVFDS1824DNGD",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM8200CKYL/",
                "accession": "IGVFSM8200CKYL",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0005904/",
                        "status": "released",
                        "term_name": "H7-hESC"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1176913287,
    "flowcell_id": "225L7NLT3",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI6345HQKI/@@download/IGVFFI6345HQKI.fastq.gz",
    "illumina_read_type": "I1",
    "input_file_for": [
        "/tabular-files/IGVFFI5550IBSN/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 8,
    "md5sum": "1f17b83b0c293ad74507cf0dde38a286",
    "mean_read_length": 8,
    "minimum_read_length": 8,
    "quality_metrics": [],
    "read_count": 151289121,
    "release_timestamp": "2025-03-07T01:14:23.267358+00:00",
    "s3_uri": "s3://igvf-files/2024/07/23/e719965d-7e00-4f0f-b99e-f2ba2fbb04a4/IGVFFI6345HQKI.fastq.gz",
    "schema_version": "15",
    "seqspecs": [
        "/configuration-files/IGVFFI2972MQBW/"
    ],
    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0022840/",
        "status": "released",
        "term_name": "Illumina NovaSeq X"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240424_IGVF11_McGinnis/ATAC/FASTQ/ATAC_4_S4_L001_I1_001.fastq.gz",
    "summary": "I1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "e719965d-7e00-4f0f-b99e-f2ba2fbb04a4"
}