IGVFFI6334XUWO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1580SPZO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP019_G4_P063_L008_R1

md5sum

ed6d0023500d0f39c40543ddea3425fd

Content MD5sum

2fd360078a14df43b229031bf702ae49

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP019_G4_L004_P063_S38_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

71078095

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0238UJFH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples