IGVFFI6332PRAO

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI6332PRAO/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6332PRAO",
10    "aliases": [
11        "leif-ludwig:measurement2303830102_scATAC_R1_005"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "d55123838409dcd385b5b5361ec0741a",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-07T20:28:31.307037+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
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33            "Item"
34        ],
35        "accession": "IGVFDS3430UPOQ",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/primary-cells/IGVFSM1376USPX/",
44                "@type": [
45                    "PrimaryCell",
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47                    "Sample",
48                    "Item"
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51                "classifications": [
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54                "sample_terms": [
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56                        "@id": "/sample-terms/CL_2000001/",
57                        "status": "released",
58                        "term_name": "peripheral blood mononuclear cell"
59                    }
60                ],
61                "status": "preview",
62                "summary": "Homo sapiens (male, 21 years) peripheral blood mononuclear cell",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "preview",
67        "summary": "10x multiome with scMito-seq"
68    },
69    "file_size": 17091721492,
70    "flowcell_id": "22JFNWLT4",
71    "gene_list_for": [],
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73    "illumina_read_type": "R1",
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75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/leif-ludwig/",
78        "title": "Leif Ludwig, MDC"
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81    "loci_list_for": [],
82    "maximum_read_length": 101,
83    "md5sum": "a12dd3e1c25f62cfeb56716f8ec18c6b",
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85    "minimum_read_length": 101,
86    "quality_metrics": [],
87    "read_count": 330881839,
88    "read_names": [
89        "Read 1"
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92    "schema_version": "15",
93    "seqspecs": [
94        "/configuration-files/IGVFFI5763SLLI/"
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96    "sequencing_kit": "NovaSeq X Series 25B Reagent Kit",
97    "sequencing_platform": {
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99        "status": "released",
100        "term_name": "Illumina NovaSeq X Plus"
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102    "sequencing_run": 1,
103    "status": "preview",
104    "submitted_by": {
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106        "title": "Ludwig Lab"
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108    "submitted_file_name": "/data/cephfs-1/scratch/groups/ludwig/IGVF/A5076_FASTQs_NEW/A5076/250228_LH00253_0210_A22JFNWLT4/A5076_hPBMC_2303830102_Multiome-ATAC_944_S2_L005_R1_001.fastq.gz",
109    "summary": "R1 reads from sequencing run 1",
110    "upload_status": "validated",
111    "uuid": "4b525127-0925-4913-972b-7afb01285109"
112}