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IGVFFI6331OWCQ

released
validated
File Set
IGVFDS4911ZDCJ(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 242
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2030_R1
bradley-bernstein:SS-LS_242_R1
buenrostro-bernstein:SS-LS_2030_R1
buenrostro-bernstein:SS-LS_242_R1
md5sum
5e2e7a606e7739c8cc3ca52c95cdb262
Content MD5sum
35ca53e717f7fd447672a41a0bc41208
File Size
119 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-155_L2_SS-PKR-129_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
242
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
4272509

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6331OWCQ, IGVFFI5954LBNR
Jason Buenrostro, Broad
1.2 KB
validated