IGVFFI6326RWZN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8552LVZZ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G2_P057_L004_R2

md5sum

1e23c5a87a2318d82cfa815bec9703ce

Content MD5sum

ec3459f9df05c2580444804dd14e4fd4

File Size

752 MB

Submitted File Name

Multiome_ATAC_RP009_G2_L002_P057_S10_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

43185429

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1206IWFU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples