IGVFFI6323RWRK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0911QBRM(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP024_G2_P067_L003_I1

md5sum

ef443201c40ae35e5bc87a7b16753f74

Content MD5sum

3479d65a4fbcd0ae6d0247d84d646c5c

File Size

468 MB

Submitted File Name

Multiome_ATAC_RP024_G2_L002_P067_S18_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62887302

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3515JFEY

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples