{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI6320ENYC/",
"@type": [
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"File",
"Item"
],
"accession": "IGVFFI6320ENYC",
"aliases": [
"charles-gersbach:measurement-set-crispra-control-1umET1-ipsc-cm-targeted-hicar-rep2-R2"
],
"assay_titles": [
"HiCAR"
],
"audit": {},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"content_md5sum": "ea9ac7fc7a80b83d59ba12c3ae1e199d",
"content_type": "reads",
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"creation_timestamp": "2024-10-23T19:29:38.328364+00:00",
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"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS6748EEVW/",
"accession": "IGVFDS6748EEVW",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7176NKKR/",
"accession": "IGVFSM7176NKKR",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
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"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/bbe5df8d-a9e2-4a99-8942-9b3b7d12c605/",
"purpose": "perturbation",
"status": "released",
"summary": "Treatment of 1 μM Endothelin-1 for 3 days",
"treatment_term_name": "Endothelin-1"
}
]
}
],
"status": "released",
"summary": "CRISPR HiCAR integrating a non-targeting guide (sgRNA) library"
},
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"gene_list_for": [],
"href": "/sequence-files/IGVFFI6320ENYC/@@download/IGVFFI6320ENYC.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [
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],
"integrated_in": [],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
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"maximum_read_length": 100,
"md5sum": "f8fb125f9c696bf79fe128e1458ad25f",
"mean_read_length": 100,
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"release_timestamp": "2024-12-13T19:43:54.391566+00:00",
"s3_uri": "s3://igvf-files/2024/10/23/d093bfae-29d8-4823-ba04-4b8435cad778/IGVFFI6320ENYC.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "NextSeq 1000/2000 P2 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
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"status": "released",
"submitted_by": {
"@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
"title": "Ruhi Rai"
},
"submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_human/crispra_hicar_human_fastq/H_vp64_r2_NT_3_1uMET1_ds.93b658e4765c49439a23ab618727f7eb/H_vp64_r2_NT_3_1uMET1_S7_L001_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 4",
"upload_status": "validated",
"uuid": "d093bfae-29d8-4823-ba04-4b8435cad778"
}